miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|159599585|gb|EG395500.1|EG395500 TTGAAAAGAAAACAAGCCTTACGTGATTTNCNNTTAGTACTCCCTCTGTATAAAAGTGACCTAAAACGTCTTACATTTGT
TTACAGAGGGAGTATTTCCTTCATGCCACACCACCGTACACACAAGATACAGTGCTTTATCAGGACACAAGCGCACTGAC
CCCTCTCCGCTTGCTGTTGCCGGTGCTTGCCCATCTCTCTTATTCACCGACGCCGTGTCATTTGCTTCACATCTCCGCTA
CAAGCCTGGACTGCGCCAGCGCCAGGTCGAATGCAGTGAGAGAGTGAGGAGGCAGCGTGACCTGCATCTCCTCCGCGGCG
TCGCGCAACTCGATCGTCACCGGCACAACCTTGTTTGGGTTAGCGAAAGAGTTCTCGTCCATTACACTGCCGGATGTGAG
AACAGTCGCGGTGGATCCGAGCGCATTGATGCTGCCCTGGAGCCCAGTTGCTGAGATCGTGAGGCTCACGGCATCTGGCC
CGAAGTTCACAATCTTCACTCTTAGGAAGCTGTTCTCGTAATCATGCCACGTGATCGCAGATGCTGCCAGCGAACCAGAG
TAGCTTGAACTGACTGTGATGGGATGGATCATAGCGCCGCTTGATTCACGGAAAAGCTTCTGCATCCAGTAACTGGGAGT
TCCATATTGCTGCCAGGAGTTGAAGACGATAGCGTCTGGGTTCCACGTGCGGTCGTTATCATTTAT




Most similar to sp|Q9SG80|ASD1_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9SG80|ASD1_ARATH Alpha-L-arabinofuranosidase 1 OS=Arabidopsis
           thaliana GN=ASD1 PE=1 SV=1
          Length = 678

 Score =  137 bits (345), Expect = 7e-32
 Identities = 73/156 (46%), Positives = 98/156 (62%), Gaps = 1/156 (0%)
 Frame = -1

Query: 706 INDNDRTWNPDAIVFNSWQQYGTPSYWMQKLFRESSGAMIHPITVXXXXXXXXXXXAITW 527
           +N NDR WNPDAIVFNS   YGTPSYW+Q+ F ESSGA +   T+           AI+W
Sbjct: 508 VNTNDRRWNPDAIVFNSSHLYGTPSYWVQRFFAESSGATLLTSTL-KGNSTSLVASAISW 566

Query: 526 HDYENSFLRVKIVNFGPDAVSLTISATGLQGSI-NALGSTATVLTSGSVMDENSFANPNK 350
            +    ++R+K VNFG ++ ++ +  TGL  ++    GS  TVLTS +VMDENSF+ P K
Sbjct: 567 KNNGKDYIRIKAVNFGANSENMQVLVTGLDPNVMRVSGSKKTVLTSTNVMDENSFSQPEK 626

Query: 349 VVPVTIELRDAAEEMQVTLPPHSLTAFDLALAQSRL 242
           VVP    L  A E+M V LPPHS ++FDL    +++
Sbjct: 627 VVPHESLLELAEEDMTVVLPPHSFSSFDLLKESAKI 662